Scaffold Ga0181360_100084

Overview

Basic Information

• Taxon OID: 3300019781
• Scaffold ID: Ga0181360_100084
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Sp13.ND.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4991
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (7.69%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000716	Metagenome / Metatranscriptome	923	Y
F010462	Metagenome / Metatranscriptome	303	Y
F053753	Metagenome / Metatranscriptome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181360_10008411	F053753	N/A	MNHQLKFGYSQLGTNILVKINCKMSNQQAIELEKKFPEVCMWQTRKGYRIEGSFNTKQNNVYVYTKFEDFKLTLALNLNDFKINKLIDKNQVLLNQGNLELSVADLDLPF
Ga0181360_1000845	F000716	N/A	MKNLEIEIKNYQLNSDKTYMKYELDKYSEYQNYLYKRALYGLNALNEKELITICSKKKQRILNVYKKAQTILNVLKQKISINYTNSLFLNLFPNSNLTTSLIENTEIDEKFKNCLTFKDLNINKPDIITIFIQEGVLPKNFLNLKEMPVTLPRLKNETKA
Ga0181360_1000847	F010462	N/A	MLYQLPNGKVIYISIEDYLDLTDEDIQMFMSMNCGEYVRDPFKGSAVESNTKEKYYDFEFLSQDDELLNNISSDDEPFDDIIDLSDDTEI