Scaffold Ga0181360_100007

Overview

Basic Information

• Taxon OID: 3300019781
• Scaffold ID: Ga0181360_100007
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Sp13.ND.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24417
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (32.56%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009945	Metagenome	310	Y
F011473	Metagenome	290	Y
F011827	Metagenome	286	Y
F016246	Metagenome	248	Y
F016922	Metagenome	243	Y
F026794	Metagenome	196	Y
F037053	Metagenome	168	Y
F057879	Metagenome	135	Y
F075699	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181360_10000711	F037053	N/A	MTTPTVDDIIADLESRGLGWSLDNTGRLIEARVWDWPHVIGRYRPAKTEPLAKMLAAACYEVDWTAYPVKA
Ga0181360_10000712	F009945	GAG	MSTALAIFKRTHGVATHRKAGAGHRYPWMAFFHRIRMKDGTVRWFSELANEYSMDTLECRNKVADADTEEEACKLLAKRNGFPWPADEPKKRKAKP
Ga0181360_10000714	F026794	GGA	MMHSGDNPGSISERDLRVTASQLRAAENDAREATRGEMTFDELDRRYADPISREEAVALRPFFEAFCEGRTVWAYELKERYGRPMPTWTPITEWDAHFRRMCLSLEYRTDNPFATE
Ga0181360_10000715	F057879	N/A	MTIPSTEPTNPRDTVRPAPVPEGGQQEPESPFAGASQVPPWEL
Ga0181360_10000719	F016922	AGGAGG	MNHIRISSRAIQCRADAEGATEYAIRYGGHDFIVTAHSRLEAGIAVEYYRPDEPDAAQPELLP
Ga0181360_10000722	F011473	N/A	MNWKKYITDPLTSRPRRGAISRIAALLGTHYGCVKRMFDGVWTPTDEEANGLRAIVASRTNLAPKKRSDAGKKRGEYRKRAVAKTGVAAPQLKALRSAKKTALK
Ga0181360_1000073	F011827	N/A	MRNRTHSANTHLNYRSRWKERDAVSSKRHGETCDDIRIACHLWLLKRCPGYAEEHAEHVEQYARSLGRA
Ga0181360_10000740	F075699	N/A	VAEERLYHSIVADAACAAGRHVVCGRTLKPFCLLHSFQLSQLENKLWTGEEPEPHELSIAAQICASDEPVLDFAEDAAPFDMETELAKWRAYTRLCASSPMMKERITATVTLNDYGAPVELWCTAFLMTKLRIDERRAWRMPYGLAWWYVQAAHEQETGETYILTEEELAHMDEQSTPEALAAREEFDGNARWIVENVKDPASRGAMLKQLSEGTLAGDWRAEYV
Ga0181360_1000076	F016246	N/A	MTQLDMFPHLPRRLTHAEILAGFAELLRAVEAMEFWEPWP