NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190267_11322062

Scaffold Ga0190267_11322062


Overview

Basic Information
Taxon OID3300019767 Open in IMG/M
Scaffold IDGa0190267_11322062 Open in IMG/M
Source Dataset NamePopulus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)540
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location
Location NameUSA: Arizona
CoordinatesLat. (o)35.0244Long. (o)-111.7363Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014785Metagenome / Metatranscriptome260Y
F024965Metagenome203Y

Sequences

Protein IDFamilyRBSSequence
Ga0190267_113220621F014785N/ARTHDAHTQGDLVATLYCPCGKARELWGEFWWTEGRYQWIFFDYEKRSETYAEQVENCPACGRLLERKHLLS
Ga0190267_113220622F024965N/AIDDLWDLTVQGIWEAHLNGELAEAEVVDRVAVRAAGVLAQKGYWTWMFQAATEDLTSWQDLDWNYWIVDPNNGCIWEWGTV

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