Scaffold Ga0190267_11201861

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0190267_11201861

Scaffold Ga0190267_11201861

Overview

Basic Information
Taxon OID	3300019767 Open in IMG/M
Scaffold ID	Ga0190267_11201861 Open in IMG/M
Source Dataset Name	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	556
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location
Location Name	USA: Arizona
Coordinates	Lat. (^o)	35.0244	Long. (^o)	-111.7363	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020400	Metagenome	224	Y
F036444	Metagenome / Metatranscriptome	170	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0190267_112018611	F036444	N/A	SFDLEPRQLQSAIEIGSFEITEVFDQSAIKKPSLVVRFSTLGLSANIVALESKCASKSNPNQ
Ga0190267_112018612	F020400	AGGAGG	MTRLILASLVLTISILPLYAQSSSLHTDRSGYTTGTDGIGTAIRQA

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