NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190267_11105788

Scaffold Ga0190267_11105788


Overview

Basic Information
Taxon OID3300019767 Open in IMG/M
Scaffold IDGa0190267_11105788 Open in IMG/M
Source Dataset NamePopulus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)570
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location
Location NameUSA: Arizona
CoordinatesLat. (o)35.0244Long. (o)-111.7363Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005536Metagenome397Y

Sequences

Protein IDFamilyRBSSequence
Ga0190267_111057882F005536AGGGGGMWAVMVDEADCPACATGWHARCSWPHHEDDGDGELVERCCDGLLIARRRRPLWTR

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