NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190267_10574279

Scaffold Ga0190267_10574279


Overview

Basic Information
Taxon OID3300019767 Open in IMG/M
Scaffold IDGa0190267_10574279 Open in IMG/M
Source Dataset NamePopulus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)690
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location
Location NameUSA: Arizona
CoordinatesLat. (o)35.0244Long. (o)-111.7363Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016872Metagenome / Metatranscriptome244Y
F020315Metagenome / Metatranscriptome224Y

Sequences

Protein IDFamilyRBSSequence
Ga0190267_105742791F016872AGGAGGMPNDQTAQEDARRLLVAFRTNHPEARMVSPHGLDRPFVPNWTDADQAGLDRVRRDNAMRWLVDEEVLVRDEEAENLLVTGEGFPVYDFGSVFRITDS
Ga0190267_105742792F020315AGGAVDEESLKLLKAMREQLEETSGRAVDAGDAAKSLGMYPETLDRSLLYLVRAGYVEEYADRAMTSRNGMFMITLQGIAAIDNA

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