NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190267_10187697

Scaffold Ga0190267_10187697


Overview

Basic Information
Taxon OID3300019767 Open in IMG/M
Scaffold IDGa0190267_10187697 Open in IMG/M
Source Dataset NamePopulus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)953
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location
Location NameUSA: Arizona
CoordinatesLat. (o)35.0244Long. (o)-111.7363Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041055Metagenome160Y
F057154Metagenome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0190267_101876972F057154GGCGGVAAYKPEAHHAAPRCLISLHERANGTSLDGEGIQAWLEWEWEAMRWCVPVEISREDLEALVERKPWCWSGRSTA
Ga0190267_101876973F041055AGGAGMDEARITRPSPPSTSAIVAYEDFCKQVAALLLCDRAPIHDAFIGEPVEEVLEMVRWALSHEDDEGFDTAEVLTSWAKKRGRGAWSGRPRRPERDPYEELASALGSYWKEHPGELTALLDRAEASLNGRS

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