Scaffold Ga0190267_10090041

Overview

Basic Information

• Taxon OID: 3300019767
• Scaffold ID: Ga0190267_10090041
• Source Dataset Name: Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1187
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location

• Location Name: USA: Arizona
• Coordinates
  • Lat. (^o): 35.0244
  • Long. (^o): -111.7363

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036586	Metagenome	169	Y
F101382	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0190267_100900411	F101382	N/A	PGVEAFYADHNTYSGLHLTKLQLSYDAGIKNVSVVRATAASYCVQSTVGQATWKKGGPSADITVTAC
Ga0190267_100900412	F036586	GAG	MASQLRLQVVIPLVFLGLLGSAFGVYTMGKAPSGGSGDPGVPLITTHPDKSKPKPPATSEEWVKSLEAWCGYLQAQYEKIEEPVTLADYESVLGEYVELWDSAQPAFIKLGLPSQKPATAIALRKNIDTSASELRWVFNRIQALDVAAIENRLDDLNALDSERVALTRQLGAGKCLDEENKGVARLAIQQAPLLINSQLRRYGKVVVLFYEPGANYDAIQTREARAGALLAHAGFVSVNVSKNREVGQLASQYNVLQSPTVLIFTRGHDLKARIDGFYDRTAI