Scaffold Ga0190267_10026700

Overview

Basic Information

• Taxon OID: 3300019767
• Scaffold ID: Ga0190267_10026700
• Source Dataset Name: Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1768
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location

• Location Name: USA: Arizona
• Coordinates
  • Lat. (^o): 35.0244
  • Long. (^o): -111.7363

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012851	Metagenome	276	Y
F039477	Metagenome	163	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0190267_100267004	F012851	GGAGG	LAKCAGITRSGAACKGIPIEGSQWCYVHHPDHVDERRRHGSKGGKRGGRGRPVTELANLRDENANIRRRLLEGELAPNVAAVAVQSINTDIRAVGAALKAREQEELVERLEALEESLEQRKGDRRYGS
Ga0190267_100267005	F039477	AGGGGG	MGVRGRLKRLERGSREDLASFALEDGSRHYYDPESGECFLHSMDCLRAQGDGVPFPEPPETVKAIARAKNRRAALDQLYSGGSFGVFPYEPVALVERGELVPRSLVAGRDLGDGPIPDLS