Scaffold Ga0190267_10025997

Overview

Basic Information

• Taxon OID: 3300019767
• Scaffold ID: Ga0190267_10025997
• Source Dataset Name: Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1785
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location

• Location Name: USA: Arizona
• Coordinates
  • Lat. (^o): 35.0244
  • Long. (^o): -111.7363

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004218	Metagenome / Metatranscriptome	448	Y
F019902	Metagenome / Metatranscriptome	227	Y
F029350	Metagenome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0190267_100259971	F029350	AGGAG	MTSGYTPGSMPEKDQPGFDQILGALREGLNEDPRLKGMPAEEVARRLVRHGHLEGEPPPPLVAEALEGLEAEEQSLQNDELYSEDANPT
Ga0190267_100259972	F004218	AGGA	VAKTYELDTMISPSSLLARAKKAAYANGATLLGDERSGRFSHEMAKGEYRMVGQKVIVTVTDKHWLLPWAVVEIRLRELLASA
Ga0190267_100259973	F019902	GAG	MLRENVLREIASRAVRDPDFLRKARQNLDSTLARHGYDLTDEEMRLVEDLRRRTVGKSGEQLARALSDGFVGSTGTPPVLPASANWRGSGPSRPARPGG