Scaffold Ga0194024_1025213

Overview

Basic Information

• Taxon OID: 3300019765
• Scaffold ID: Ga0194024_1025213
• Source Dataset Name: Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW13Sep16_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1280
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location

• Location Name: USA: Delaware
• Coordinates
  • Lat. (^o): 38.7906
  • Long. (^o): -75.1638
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018534	Metagenome / Metatranscriptome	234	Y
F020115	Metagenome / Metatranscriptome	226	Y
F062175	Metagenome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194024_10252131	F062175	N/A	MMTDKEAQAFMQKVDATAPFWVELHDEDQPTIKIQGRDVPRCLYNLM
Ga0194024_10252133	F020115	N/A	MTHQQFEIFREWADRVANTANDTDTHIRAIDLVHDIAGILANDEHFLPRL
Ga0194024_10252135	F018534	N/A	VTGMTPERNDSVMTIAPNGATVTIEYRHQISAHTGETSTVAYLVAYDSNGNRVTLRNQTYGCFDDEEKQFHQWFATKMASALELDARRRKDLSDGIDMILAYI