NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194024_1012599

Scaffold Ga0194024_1012599


Overview

Basic Information
Taxon OID3300019765 Open in IMG/M
Scaffold IDGa0194024_1012599 Open in IMG/M
Source Dataset NameFreshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW13Sep16_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1776
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1638Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008547Metagenome / Metatranscriptome331Y
F017633Metagenome239Y

Sequences

Protein IDFamilyRBSSequence
Ga0194024_10125992F008547N/AMSVTIYLTDHNGRKVAFFYRIDSERYNTAPSIIWACRDYPEYQGRAESKECFMEQCKSVMKELNKISQNDRSTCEKIPCDTCGLTSPKMEAQSTCPQCLIND
Ga0194024_10125993F017633N/AMTDNLTDPDFLPMNDLDNDHIRALIQHYLSVREKLPDNLTVRDRLEELQAELINRTLKADTESEANNRTSTIEGMIRQSTDNPIQNQ

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