Scaffold Ga0194024_1005039

Overview

Basic Information

• Taxon OID: 3300019765
• Scaffold ID: Ga0194024_1005039
• Source Dataset Name: Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW13Sep16_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2715
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location

• Location Name: USA: Delaware
• Coordinates
  • Lat. (^o): 38.7906
  • Long. (^o): -75.1638
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008719	Metagenome / Metatranscriptome	329	Y
F041217	Metagenome / Metatranscriptome	160	N
F059018	Metagenome / Metatranscriptome	134	N
F070161	Metagenome / Metatranscriptome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194024_10050393	F059018	GAGG	MAVPKIKVSPALKKKLAEIDEMLEDAVERKMTDVARTIVLASPVDTGAFVNSWSFKDNLGGGRSKSSLGKPTGRDERSERGKALNNLVNDIKKTVEVGSPGGPVKEGIGIQADNYYFINRAPHAKEVDAHPKHRVVDKVIRQHGR
Ga0194024_10050394	F070161	GAGG	MSFNARDLLKLVQDFGETLTLRKVTTDGTYDADTGTLTGSATTDYSFTGYFYNLAEGTSDLTQTRKGRRACVIPAKGLTATPDDQDQILGNGDTVNITTVRTIFSDGQAVCYLCEVYD
Ga0194024_10050396	F041217	AGGA	MTPDYSLLPFQLNWVQLVRQEFKGYGTEWKRGDVFDWEQRGIPWQDVMSLFNRGFLMQEAPTEDNQKKVVGDGLDELGPEELAVIVENINAKVKQFVKTDREYQNKKCKASTITKKQRGHIRTWRNSPWSDWEQA
Ga0194024_10050397	F008719	N/A	AWNSIPGANNLGITVESFSDDALKRQQIAEMIQVKMSYDMKMVGADLGYFFENIVAAD