Scaffold Ga0194024_1001343

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0194024_1001343

Scaffold Ga0194024_1001343

Overview

Basic Information
Taxon OID	3300019765 Open in IMG/M
Scaffold ID	Ga0194024_1001343 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW13Sep16_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5027
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (61.54%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location Name	USA: Delaware
Coordinates	Lat. (^o)	38.7906	Long. (^o)	-75.1638	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F047993	Metagenome	149	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194024_10013438	F047993	AGGAG	MLFLGVGAVMFTATLFIGGWVLYDQFWGGDAKDTTESEVPVFAYHHESEILEQPTAGIKYLVEDDEGIDADQTLSAVMQWVQADEPNIWTGDWQVRVNTWNDAGVIQIHGDASTLIEDRYDDVALPYFTGDGFLEQATADLEFV

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