Scaffold Ga0194023_1011717

Overview

Basic Information

• Taxon OID: 3300019756
• Scaffold ID: Ga0194023_1011717
• Source Dataset Name: Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW6Sep16_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1760
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location

• Location Name: USA: Delaware
• Coordinates
  • Lat. (^o): 38.7906
  • Long. (^o): -75.1638
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025731	Metagenome / Metatranscriptome	200	Y
F027834	Metagenome / Metatranscriptome	193	Y
F027835	Metagenome / Metatranscriptome	193	N
F055727	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194023_10117172	F025731	N/A	MSTDTQRKKAQMASALFNDVQLLGSTVTCTAEFDLLSCDEQMRLVDLVNSAQ
Ga0194023_10117173	F055727	N/A	MMYNHFLEFSVDEMVDAYTYFALIHDYEGCRLVGEAFAQSTSIDFQNF
Ga0194023_10117174	F027834	N/A	MCFAYGSTMLTGGSSIGIMDNREFYVPKYGYVVGGIVPEKSCDMDNEMAFTQTYNRFFYQAELALERESAVVIGTWCEDGKIVFDLCNVLDDMKDALELAAKRGERAIYDLENEKEIFVNTGA
Ga0194023_10117175	F027835	N/A	MMKTQQHIDALYERRKTAGGFESALIDAYMKADGGNAKLLEDAFKGTRFDLTPKPKYNHGVEVLRAAAYWSGERDEYLNDDKTAFQIINEYLISASSSTYNFGDE