Scaffold Ga0194023_1001563

Overview

Basic Information

• Taxon OID: 3300019756
• Scaffold ID: Ga0194023_1001563
• Source Dataset Name: Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW6Sep16_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4509
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (68.42%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location

• Location Name: USA: Delaware
• Coordinates
  • Lat. (^o): 38.7906
  • Long. (^o): -75.1638
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056403	Metagenome / Metatranscriptome	137	Y
F076129	Metagenome / Metatranscriptome	118	Y
F101126	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194023_100156318	F101126	N/A	MPKFIVDLWLDGYDTEEEMVDACKEFIYDQLNFSASSVKIELVDELER
Ga0194023_10015635	F056403	GGA	MTKIEIGSKWKHKNSNDVYVVMEQYSHKVVLKHELTGTIIKLTLGHLNPDGFAEYERIEE
Ga0194023_10015639	F076129	GAG	MTNPNPECPREDCRFAYGGGRTTLAYYQPIYDKNGLNTNPDRNTTTFEISCGSCGRMWVGETCAGETTYEEVKND