Scaffold Ga0194023_1000066

Overview

Basic Information

• Taxon OID: 3300019756
• Scaffold ID: Ga0194023_1000066
• Source Dataset Name: Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW6Sep16_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15760
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (36.36%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Aestuariivita → unclassified Aestuariivita → Aestuariivita sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location

• Location Name: USA: Delaware
• Coordinates
  • Lat. (^o): 38.7906
  • Long. (^o): -75.1638
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002528	Metagenome / Metatranscriptome	551	Y
F009001	Metagenome	324	Y
F012662	Metagenome / Metatranscriptome	278	N
F017635	Metagenome / Metatranscriptome	239	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194023_100006611	F002528	GAGG	MKKTPTQTTSNHTSDEANALPIIKIVSEEEEMHVKLGLEMEDETHDMLVKWGKEVASDEDYVRIAIDAGIQEAVKALDNKQK
Ga0194023_10000664	F012662	N/A	MKETLLQPSDMIEELMYHIMWNEFDGKLDPNHKYFPLYLSLQQLLEDETKRLEE
Ga0194023_10000665	F017635	N/A	MTSSNNLTDQDFLDMNDLCDASLEALIQHYLSLKHKMPDNLSVRERLVELQDEKFTREREASTIEGVIRQNTENPL
Ga0194023_10000666	F009001	GGAG	MSVTIYLTDHHGRKVAFFYRIDSERYSTAPQLIWCCRDHPEYQGTAESKECFMEQCKSVMKQLKRSVPVRKSCDVCEKTLQGMENEGTRCIEHDFQ