Scaffold Ga0194010_1065141

Overview

Basic Information

• Taxon OID: 3300019753
• Scaffold ID: Ga0194010_1065141
• Source Dataset Name: Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? FLC_6-7_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 628
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location

• Location Name: USA: Delaware
• Coordinates
  • Lat. (^o): 38.7906
  • Long. (^o): -75.1638
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004130	Metagenome / Metatranscriptome	451	Y
F037205	Metagenome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194010_10651411	F004130	N/A	MYHGAAGFLDSFVQDEVKCRCLNFEEDFGQPLANEENDVPLYDQYNRGLAACEQGLERTNLGLEGNQERPGLTGYIPSMEQGMGMGASPKPKTLV
Ga0194010_10651412	F037205	N/A	MANLFSPEEDPRRLPGTSGAELTELNPEQAYDTDLRRVAEEDRSATESVNDRQGRVAKFMRAAKSAGAYRQRTGIDEPTIRGRTPRNPATIDGTELPSMG