NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194029_1079767

Scaffold Ga0194029_1079767


Overview

Basic Information
Taxon OID3300019751 Open in IMG/M
Scaffold IDGa0194029_1079767 Open in IMG/M
Source Dataset NameFreshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW18Oct16_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)562
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1638Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008684Metagenome329Y
F036016Metagenome171N

Sequences

Protein IDFamilyRBSSequence
Ga0194029_10797671F008684AGGAGGMTDKNFDMACQLADDLYFKFMDNLSDDIVSEFVIDDKDNIGGTKNTDKGSDLYWQIEDTIKQALDKLEE
Ga0194029_10797672F036016N/AKEPTQFEEEDIIQAEEGIFTPLKKITNLGNYIPKGWKRFNTNELKDQLGLPYDWKFLDNGVLFVDSSGFGSDNEPALSVRQCLETISKLFRIRDDLGFAICSEGQFQLTIGVYEEDK

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