Scaffold Ga0194029_1031522

Overview

Basic Information

• Taxon OID: 3300019751
• Scaffold ID: Ga0194029_1031522
• Source Dataset Name: Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW18Oct16_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 839
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location

• Location Name: USA: Delaware
• Coordinates
  • Lat. (^o): 38.7906
  • Long. (^o): -75.1638
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014153	Metagenome / Metatranscriptome	265	Y
F050768	Metagenome / Metatranscriptome	145	Y
F101299	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194029_10315221	F101299	AGGAG	MIETIATIDILNLAIDKIDDGKIADAKDDLITFRDKLQNEVDQFDEWAKTQSDIHTSLELEQEDK
Ga0194029_10315222	F050768	AGGAGG	MEWLLLILIIMMTAVAVAYSGEIYLYLSLVFGSMIRDIQDKINSIIGRKK
Ga0194029_10315223	F014153	AGGA	MFYTKEMIFTEFKMATQKDERNAMKTANKQSYKNRIAYLTALKEDMIKAPRNFSNLSLTTDQLQNLIDDWSAPKPIDAFYKRIFNMTYAEKKAQ