Scaffold Ga0194029_1007524

Overview

Basic Information

• Taxon OID: 3300019751
• Scaffold ID: Ga0194029_1007524
• Source Dataset Name: Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW18Oct16_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1505
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location

• Location Name: USA: Delaware
• Coordinates
  • Lat. (^o): 38.7906
  • Long. (^o): -75.1638
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002318	Metagenome / Metatranscriptome	571	Y
F038215	Metagenome	166	Y
F105916	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194029_10075242	F002318	AGGGGG	LKNKAYSVTKDLEQRNPGKKFYSFMDMEDAEIRKKEVILPLPKKYFNKIVKLIKGEK
Ga0194029_10075243	F105916	AGGGGG	MNKPIIKQVKNDKGVIFNAEIYKDKKENDWFITFYDSRYKENFGKLGQGVSTYYLGTILNKKGYYGSSNKDSGLNLYGGSNDWYIDYKPYQKLIKFLEKKGLVNDKK
Ga0194029_10075244	F038215	N/A	MISKKSGKEKGKNFKKTYMKEIEKFSIKAIDIEELKLITFKNIIEGSRSVNGVTWNRIKNLKPKEQIICLKQLSQ