Scaffold Ga0194029_1004255

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0194029_1004255

Scaffold Ga0194029_1004255

Overview

Basic Information
Taxon OID	3300019751 Open in IMG/M
Scaffold ID	Ga0194029_1004255 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW18Oct16_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1899
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location Name	USA: Delaware
Coordinates	Lat. (^o)	38.7906	Long. (^o)	-75.1638	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006958	Metagenome	361	N
F060431	Metagenome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194029_10042551	F060431	N/A	TATLTDQEFKIYHYLCKNYNVQKHTAYVRKVDIAGLFQLTVNEVEETLVKFCQIKVNDLPLMKITKEKYEIFGMPSHKKFLEQVGFKQNNSSYGYKAIKGYLKQLGQQEQETLKNYLYPTLDMNELRDQLEDLPTEELKKINPDKLKYKWVLRDVIKNRP
Ga0194029_10042552	F006958	N/A	MSSKIDHELNQYLFVRSNIVNILADAAIAERFIRAPSNKRCPSMYQMLETYYDKKDWGYHVEPTLKLRGTPKQMQNYDTAIDLLLMIDTDISEDPVLMRKISWMRANRNKWTSIGKYFGIHRTSVKRMYDNVLDKLSNKIIADSVDILIKKFS

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