Scaffold Ga0194029_1003604

Overview

Basic Information

• Taxon OID: 3300019751
• Scaffold ID: Ga0194029_1003604
• Source Dataset Name: Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW18Oct16_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2042
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location

• Location Name: USA: Delaware
• Coordinates
  • Lat. (^o): 38.7906
  • Long. (^o): -75.1638
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020533	Metagenome / Metatranscriptome	223	N
F031662	Metagenome / Metatranscriptome	182	Y
F038411	Metagenome / Metatranscriptome	166	N
F044429	Metagenome	154	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194029_10036043	F038411	AGGAG	MTQHTEKVEQVRRRNRLDNWRKGIKFSLGETINNGEDVKHTTIYNDDSQTIEYLKSDRKTETIPSPHSEDDLVDLMMRGETATAEAIIRKLAQGEDNE
Ga0194029_10036044	F044429	AGGAG	MSELPPIEDRMPGCEWVLVIKYGDPYTNIPQTTSFGPFPTKEDADSFRAQYYYDQIVIAEIVPLNAVLPDSATELDIDFVPEGKVVDISSKINPNKH
Ga0194029_10036045	F031662	AGGAG	MDFKIEKNVPVRTFNSPFCEALDQLEIGDSIGNLTKKEVYRYRPNFYTPTFRDRKFTFKKETGTMYRIWRVA
Ga0194029_10036047	F020533	AGG	MQDAIMLDQDDLVAEFERKVRDKKIFFEVINPGETESKGVDIEAMLEENNKLKSELRIWKDIVEKSITADARRGFNG