Scaffold Ga0194029

Basic Information
Taxon OID	3300019751 Open in IMG/M
Scaffold ID	Ga0194029_1003571 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW18Oct16_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300019751 Open in IMG/M

Scaffold ID

Ga0194029_1003571 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW18Oct16_MG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2050
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (25.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

2050

Total Scaffold Genes

8 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (25.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location Name	USA: Delaware
Coordinates	Lat. (^o)	38.7906	Long. (^o)	-75.1638	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Delaware

Coordinates

Lat. (^o)

38.7906

Long. (^o)

-75.1638

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018478	Metagenome	235	Y
F025412	Metagenome	202	Y
F027524	Metagenome	194	N
F099320	Metagenome	103	N
F100003	Metagenome	103	N
F103288	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194029_10035712	F027524	N/A	VNEAFIKEKRQVIETACKNICKHSDIWKDLSQEVNIYFLTNELPSNLNKIDGFIFVVAYKMFHLSGSEFNRLHFDNVLQESTELDYLKLKDIPYISNNVYKEYLEQVKQLDEMERIWVEEIVKRNLSIKLFSDHTGIHRATAKERMESIYNKLRKQNK
Ga0194029_10035713	F103288	N/A	MSIIVISILTILGWTSLFKQTFSTKEGFRYVYQPISKILYTLDFKPLNCAYCLSFWFGLVLTIAFMDITYMVIFLYFAKQD
Ga0194029_10035714	F025412	N/A	MDYRELKWGALKSYATKLGINTKGMTKVALLDCLAAMPEEAHEVEELTPFTGIKQSHPLFEELEPYLPYLKAYKKLNAISRDPKVNKAIATLFLKYIEEDKNIRLNLGCGICKQRYYQRMIAGYNRLVEEYGGERI
Ga0194029_10035715	F099320	GGAGG	MEENVYSYCLEVHEDGQLYMVTEYMNGYITIWAANATIETEGEVYFINLYED
Ga0194029_10035717	F100003	N/A	MKIKKKHYKALQYASLIQRWKYLPSNFIFEVVQNSEVNESMLNRNRIELNGKRI
Ga0194029_10035718	F018478	GAG	MVKEYEAMDWSKEYTYKDKKIYISHETKKYIICSFNENGVGKF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0194029_1003571

Overview

Ecosystem & Geography

Associated Families

Sequences