NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194029_1003512

Scaffold Ga0194029_1003512


Overview

Basic Information
Taxon OID3300019751 Open in IMG/M
Scaffold IDGa0194029_1003512 Open in IMG/M
Source Dataset NameFreshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW18Oct16_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2060
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1638Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004220Metagenome448Y
F062710Metagenome130N

Sequences

Protein IDFamilyRBSSequence
Ga0194029_10035124F004220AGGAGMVEKDKLDWCYYFKSILWRPNNSGWIRLCSKDSIEGFSISTKQTKVRDHYKKIADSGVEFYTCDDDDLDKEYGMYYGNLEFDPLDIMESYSGHTKMFHKENGEWRQL
Ga0194029_10035125F062710AGGAGMATTVKVTFRISVPAQKEFKIVDKQLWKNSKNDFVSALNDEDGKELIVSDYLEMYGLEPIDDSYSEDDPNREFECIEKIIDETGKSI

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