Scaffold Ga0194029_1001288

Overview

Basic Information

• Taxon OID: 3300019751
• Scaffold ID: Ga0194029_1001288
• Source Dataset Name: Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW18Oct16_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3169
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location

• Location Name: USA: Delaware
• Coordinates
  • Lat. (^o): 38.7906
  • Long. (^o): -75.1638
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026437	Metagenome / Metatranscriptome	198	Y
F026741	Metagenome	197	Y
F049595	Metagenome / Metatranscriptome	146	N
F084181	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194029_10012882	F049595	AGGAG	MQQVDYRFEDHGSIWLCQPLTGDARENLDQACESCEDFYIRWGNALVVEPRFVDQVAMQLVEEGWTVE
Ga0194029_10012883	F084181	AGAAGG	MKTNVYDVQIEAIVTKTIRVNAVDEDAAYDLAHEIFTVANDDNEERYEQHTLNIFKVEDE
Ga0194029_10012884	F026741	GGAGG	MSNDKPNLTDSHFADMLAEPFAELFKPKKYYPTIMVEYTPTKEEWEEIVGAIWVGALEGGSNHWIDYIHTDGNNLKSSYDVVEFNFDIVIHHDDDEVEKVKAFDVIVDGINLLDPERQRLALTVDELGQLDANDYDYIIQLGVFGKEVYC
Ga0194029_10012886	F026437	GAGG	MKYYVGNIDEQYGYFEVEQSILFATAGDPDEVMEEIAKDWYGLDEHDSDGLREGMYWNEGMAYGAGRYYEVTKATYDELKDKRVFTEMSVDDEE