Scaffold Ga0194029_1001257

Overview

Basic Information

• Taxon OID: 3300019751
• Scaffold ID: Ga0194029_1001257
• Source Dataset Name: Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW18Oct16_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3206
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location

• Location Name: USA: Delaware
• Coordinates
  • Lat. (^o): 38.7906
  • Long. (^o): -75.1638
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010318	Metagenome / Metatranscriptome	305	Y
F032867	Metagenome / Metatranscriptome	179	Y
F054777	Metagenome / Metatranscriptome	139	N
F066266	Metagenome / Metatranscriptome	127	N
F069855	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194029_10012571	F069855	GAGG	MAMKKVLELHPLGGTVVKLKHVDDVEPKKLSKNQRKKLLKGYYSKEKHVAMLTSIMNGKYYNRKANNKKGILPSQMGTIRKSIYKLNPETLAHMIREQEKRIAI
Ga0194029_10012575	F054777	AGGAGG	MTNKINDETLERLYEDVVADDEKGLLEKEIRDMVLRYGLHADDDRDEILQLIAEDEFYKQFT
Ga0194029_10012576	F066266	AGGAG	MSILDEHKLEKKIVYTVKEKIQEALAYRTHDRRTNKSCNQDYRKTIRDAKDFDELKRIMSEFVDDLMHI
Ga0194029_10012577	F032867	AGGAG	MDELEKMIDDLVDNHYRRQHLIGTEADESEYLADISEEDDEDLD
Ga0194029_10012579	F010318	AGGAGG	MNVDSDKPKYIECIYEAPITFDLEELGIDWDNVKDYYIKYGTLYVEFKDGSSEEHEGNQGETDWKWSARESILTEDWSLVEGLN