Scaffold Ga0194029

Basic Information
Taxon OID	3300019751 Open in IMG/M
Scaffold ID	Ga0194029_1001144 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW18Oct16_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300019751 Open in IMG/M

Scaffold ID

Ga0194029_1001144 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW18Oct16_MG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3351
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (75.00%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

3351

Total Scaffold Genes

8 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (75.00%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location Name	USA: Delaware
Coordinates	Lat. (^o)	38.7906	Long. (^o)	-75.1638	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Delaware

Coordinates

Lat. (^o)

38.7906

Long. (^o)

-75.1638

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020913	Metagenome / Metatranscriptome	221	N
F021778	Metagenome / Metatranscriptome	217	N
F023859	Metagenome / Metatranscriptome	208	N
F025038	Metagenome / Metatranscriptome	203	N
F044529	Metagenome / Metatranscriptome	154	N
F048992	Metagenome	147	N
F054022	Metagenome	140	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194029_10011441	F054022	N/A	MKIPHFKKGLKVQFVEAATDFIDPPTQEILWRYGKILFQVKSEHGAISYYIEENKKKVKVSRYLIFPVN
Ga0194029_10011442	F048992	AGGGGG	MEYAADDINYGYMSILMHINSEYTLIDKIENIRELDGNIEHPIFGTNKGGVTFTLFLRGFYTVFEAVMNFGNRFDIYVVNESGNTTMIDEDLDQLISLLHILYINKKAEEDELLNRALNPHTYRKVAKKMFYNEDPPF
Ga0194029_10011443	F025038	AGGTGG	MMVGIIGTVVNIVGVNMPEVNKNNRRFFVEDEYDLYDVRKARPFWNDVCEVNGWDIVKDEEDFKEDYVCKINNELYFMELQVVGYWHNFDLSKISNVRISASKVKLLKEKGNGGLIFLNCVPNRFFAINVNQVTPEMKKDSVREQFYEIPLKTINPREVNVLDTNYCDCLENHLAITKRYDGRMAFAQKDYNIRGANGICC
Ga0194029_10011445	F023859	AGGA	MKKVIVKFIGVKKYLVTDNADPQKIKDMFRKDLELLPPVWANNIEAVMYAKDEPEAEEE
Ga0194029_10011446	F020913	AGTAGG	MFGLFGRNKPLSVLEDIQLQKEPSEFRKIQYVLELEGFICSLDPEFNKNGNLRKAVNRLRTQYNALIYTEVCNCDNKQYAKLKKSGNPYMHKSYIKDWAL
Ga0194029_10011447	F021778	GGAGG	MAMPKFLEDYTTVDELISKMNKEYPNCRLVAEMVDNGDDWVIFKSSFYENKEDTEPKATGYARQTKADHNSWFEMASTKANGRCLRVVFSESTTAEEMIGIAPSKEAAQKKSIEKELNKAGIEYEDVSVSKSHVINNIKSFAMDLASENKTNAANWYAQALGELGINETQLDINNMQTVKNKIQDIATEIQVGGA
Ga0194029_10011448	F044529	GGA	MLIQEIIYLGFVVYGVISLLMTMAYVSIKLDDKRLREKKKDLYDVTDFESRLKEGEVLNWCNLFTGTHHFDAPADDGNFVCLKCWTYEGYEMEGV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0194029_1001144

Overview

Ecosystem & Geography

Associated Families

Sequences