Scaffold Ga0194029_1000820

Overview

Basic Information

• Taxon OID: 3300019751
• Scaffold ID: Ga0194029_1000820
• Source Dataset Name: Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW18Oct16_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3913
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location

• Location Name: USA: Delaware
• Coordinates
  • Lat. (^o): 38.7906
  • Long. (^o): -75.1638
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019114	Metagenome	231	Y
F050758	Metagenome	145	Y
F097272	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194029_10008202	F019114	GGAGG	MKHLKGRMQEARDEFYRNRRNRGFMSFWWSDPLHYVLGLEVAIADASSKSINFEAIVKLLPNSMGSRSTIATVLDDYVARGYMCKAIGKDKRKRVYRMCKESMQLLNEWFTERQRSLKAV
Ga0194029_10008206	F097272	GGAGG	MDLTEFGLDNIEAAGSSGGGERVKPGRYNLEYAGSEMIEGRNGWKALKIHFDVEGEIIKVSHAFTMAHNNDKPVEIGRESLMKMLNAMGVASMKNTDELLGKKVEGELVVGDKGYLEIADNFGNGWKPYGSTTAKENVDPKEVLPKEEIFPSDVDDEDDLPF
Ga0194029_10008207	F050758	N/A	MATQQEKLIFFMRKAKILVEDCMEKNGDDDLILPLGANRVLADIVDALEEEISRADDYEEYDPG