Scaffold Ga0194029_1000771

Overview

Basic Information

• Taxon OID: 3300019751
• Scaffold ID: Ga0194029_1000771
• Source Dataset Name: Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW18Oct16_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4002
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (9.09%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location

• Location Name: USA: Delaware
• Coordinates
  • Lat. (^o): 38.7906
  • Long. (^o): -75.1638
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F071009	Metagenome	122	N
F085539	Metagenome	111	N
F090089	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194029_100077110	F071009	N/A	MTTDPENLPSLDDESLQALITHYTGLKYKLTDNLRVRERLVELQDEQLKRQIEALGNYEPIGDDLKNQLNNQ
Ga0194029_10007716	F085539	N/A	MKITNNDLDMAINRINKLIPQKTFSYYKAQGHYYVATAIDGRRHISAKNKQSLYDQLWAFIEGLEILKTIQLN
Ga0194029_10007719	F090089	GAGG	MSVTYYLTDHNGKQIAFFYRIDSERYRTCPQILWACRQYPQFQGSVSSQSEAIEAFKQTLKEIKKLETLPVRKTCDECDKSLLGMEREGTTCDEHNFNR