Scaffold Ga0194029_1000440

Overview

Basic Information

• Taxon OID: 3300019751
• Scaffold ID: Ga0194029_1000440
• Source Dataset Name: Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW18Oct16_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5207
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED64 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location

• Location Name: USA: Delaware
• Coordinates
  • Lat. (^o): 38.7906
  • Long. (^o): -75.1638
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040673	Metagenome / Metatranscriptome	161	Y
F051183	Metagenome / Metatranscriptome	144	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194029_100044010	F040673	AGGA	METNKKDMDDMWVCDYCGTEEVDEKAWVNMNTLEVTETVEGTTYWCNNCNDEVAPLTYFEWQEKIAEECMGNKDKYDKIMDGSRM
Ga0194029_10004404	F051183	AGGAG	MAITGTKVKTNTSNKNWFVNQCRIVEAEQIDSQYNDCSIRLKLEDKDNGYNYTTFINQNFEKDVNGIVTGMAYPDDLNTLYLASGKDINVSDIGEVNVDTLIDSEVAVINYAANGKYKRATWGVVSNPNDTAELEKKFMAQIQKGYPKNYQKPQETMVEEMLGNREPAKTETIDDLPF