Scaffold Ga0194029_1000388

Overview

Basic Information

• Taxon OID: 3300019751
• Scaffold ID: Ga0194029_1000388
• Source Dataset Name: Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW18Oct16_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5533
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (94.12%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location

• Location Name: USA: Delaware
• Coordinates
  • Lat. (^o): 38.7906
  • Long. (^o): -75.1638
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002858	Metagenome / Metatranscriptome	525	Y
F024320	Metagenome / Metatranscriptome	206	Y
F026889	Metagenome / Metatranscriptome	196	N
F056585	Metagenome	137	N
F056586	Metagenome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194029_100038811	F026889	GGAG	MNNVIQEYLALVERTVYQSDLDAFDALEQLEEQYPEIADLVYQSAGPLVYDIQNNEVI
Ga0194029_10003883	F002858	AGGAG	MAIDEKSIYLVDGGDYQIYCFGYTQARTVTNDIMKRDPWGGIPFVYEQDQLEVSFDDRGNVVMPRAVLDKILFIASDELPEGEQ
Ga0194029_10003885	F024320	AGGAGG	MTFEEYEQGYYSGDSEDPSGPPEDPETHAMVEHLVEFDTEMYRLDSRRKYKGLSYRHLESLMIDLHGEEWRDAL
Ga0194029_10003887	F056585	AGGAG	MTRETWEFWADEYQEYYDDDTPVYPDDLEEWKKEEQKVIDELRQRLYGTLERETQE
Ga0194029_10003888	F056586	AGGAGG	VKRTYQVIMTKVYEVKVEAESREQAEEIFDNFGDWEELLRVHTLDVEPADYLTLREED