Scaffold Ga0194029_1000276

Overview

Basic Information

• Taxon OID: 3300019751
• Scaffold ID: Ga0194029_1000276
• Source Dataset Name: Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW18Oct16_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6598
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (42.11%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Lutibacter → unclassified Lutibacter → Lutibacter sp. B1 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location

• Location Name: USA: Delaware
• Coordinates
  • Lat. (^o): 38.7906
  • Long. (^o): -75.1638
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031255	Metagenome / Metatranscriptome	183	N
F035552	Metagenome	172	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194029_100027612	F035552	GGAG	MRIEDDLLIQADLKVLYWVLGEVAEKAKEDNDFIKVLLQLEQFVEIHKTRTNDMVTYRDTIEKARNEYRSLRLKYDGTKELLSTTKTMLDKVMNDKLEENVDN
Ga0194029_10002768	F031255	N/A	MIKYFNEVVTDLKQKGTIFGAEYRKKNGEVTKINGRFGVAKFVKGTGNSSPNVLTVWDNNRKRYTSLIPDNIVSVTTSGTKYVKSDEFLIVSYE