Scaffold Ga0194029

Basic Information
Taxon OID	3300019751 Open in IMG/M
Scaffold ID	Ga0194029_1000087 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW18Oct16_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300019751 Open in IMG/M

Scaffold ID

Ga0194029_1000087 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW18Oct16_MG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12342
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (60.87%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

12342

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (60.87%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location Name	USA: Delaware
Coordinates	Lat. (^o)	38.7906	Long. (^o)	-75.1638	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Delaware

Coordinates

Lat. (^o)

38.7906

Long. (^o)

-75.1638

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005026	Metagenome / Metatranscriptome	414	Y
F018706	Metagenome	233	Y
F026572	Metagenome / Metatranscriptome	197	N
F026871	Metagenome	196	N
F033410	Metagenome / Metatranscriptome	177	N
F081292	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194029_10000871	F018706	AGGAGG	MIDRASVLGMSGTAATFGLSTFDSAIGIVVGLVTLVYMSLKLYQEVKKK
Ga0194029_100008711	F033410	N/A	MANYATATYANLKSRFQALAGLESLQTTDASFLRDLVNRRARLAHERYPWPQFTVIGESIAIVTSDANRLRVYGTSKKTANDANVVFRIHKADPGSTRYPEEYTFYTELDSGGFPSVKIIEPTTLNGINLFVTYRKDLRSEINSGSATTGYYGDESGDESNVPNFLLDYLVTGSFADFLRGDGQNSKAQQEEQNAEAILMQEIDMVREQGRQFRNDILQYRPPSQFQRHNIQAGGSPVNPGMANVQ
Ga0194029_10000872	F005026	GGAGG	MFELLTLFLTGGGSAAMGSILKGVFGAITDARSQKHEMEMARECRNNEFAMQFQASLNNGASGAFTRATRRMLALIGMFTLSFITCITTIYPSVPLVSTTNITGEGRKEFLFGLLSFPAEQAPLVVTTGHIALFEATVVLPLIIGFYFTPGGRR
Ga0194029_100008722	F026572	AGGAGG	MGVTKKWSQMQRDQVVILRKTGLSWPKVSKGVGIPRSSCQKIWSEESDGKIELPAPPAKQIEKARVLKLVPNPRLMLIHFDGREGIARCVKRLEANHPPKSEIYVKKVEGDDDLYRIA
Ga0194029_10000873	F026871	GGTGG	MEVTHYMFAGLGVALSILAFFIKRNKWEIDDMKDRVRQIEISHAGQIKDINHLTKVCEDRREDIKKIFEKMEAK
Ga0194029_10000874	F081292	N/A	MAPKQSEGLSESSSARVNVQFAIKIIVGVATAVWCWSELTNRMAAMELQVSRVQHESTLLGDLSARMMHLEKFAEQAKADLDHLVEMQDAPITSDFQQFERLNYLEKELDRLRNRVER

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0194029_1000087

Overview

Ecosystem & Geography

Associated Families

Sequences