Scaffold Ga0193978_1034705

Overview

Basic Information

• Taxon OID: 3300019747
• Scaffold ID: Ga0193978_1034705
• Source Dataset Name: Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? FRT_5-6_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 683
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location

• Location Name: USA: Delaware
• Coordinates
  • Lat. (^o): 38.7906
  • Long. (^o): -75.1638
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016899	Metagenome / Metatranscriptome	244	N
F097268	Metagenome / Metatranscriptome	104	N
F099109	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0193978_10347051	F097268	AGGAG	MGRNWNGSCEDWLHGDEPHGFDLPDADEYPPMEQWEIDEAKAEILADIENDNERIEEKLK
Ga0193978_10347052	F016899	GGAG	MFKQYMLEGTLDPEIQAVFKAAADISNGVFSLQEAANHYKVHPTVIVQFIAESTEYDMIFSKFTEEKQ
Ga0193978_10347053	F099109	N/A	LPQNEEILKMGRKIRYYRNETTDPRLERGKLYTMHELARRVKQSPTTIRSRVGTGDTVTDEHFISKKVTRSIWPVFETETQEKSSQWLRRKL