Scaffold Ga0194002_1000777

Overview

Basic Information

• Taxon OID: 3300019745
• Scaffold ID: Ga0194002_1000777
• Source Dataset Name: Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? FLT_8-9_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2893
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location

• Location Name: USA: Delaware
• Coordinates
  • Lat. (^o): 38.7906
  • Long. (^o): -75.1638
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036487	Metagenome	170	Y
F068784	Metagenome	124	Y
F098261	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194002_10007775	F098261	N/A	MGLMDIDQLIDMIKERSRLDIYYNPQFSFRGSAEQKKEFQTYLCDTAEVKWVDILKSIQREYADMKVDQVIDMIEYDTFMGIKVVYKPVTTFSKWDRWEDGYIEGYLRTMTSPDYFIWSYHKMGKLKSLLSDFPELKLLGST
Ga0194002_10007776	F036487	N/A	MKELLTKKTYTRGWGEGFRAGWKASLEEMKARLKQYKEAEQGFSEYQQAMDEAIELIDWLSGNKKDRPE
Ga0194002_10007777	F068784	N/A	MDYQKLYRHMAIEHGLFLLDSQMREIIDIVLEMHNEKPEKCTEAIKNPSNNDQMKTAMQEMFDKLNNVKPTQYCSIQTILGWAEFLLEIEKDQIVNAYKQGCSDSILDESTDEVRAKEYYNETYTNPDRDENGRI