Scaffold Ga0193965_1076904

Overview

Basic Information

• Taxon OID: 3300019742
• Scaffold ID: Ga0193965_1076904
• Source Dataset Name: Microbial mat bacterial communities from the Broadkill River, Lewes, Delaware, United States - FB_8_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 549
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Pelagibacter phage HTVC204P (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location

• Location Name: USA: Delaware
• Coordinates
  • Lat. (^o): 38.7906
  • Long. (^o): -75.1644
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015946	Metagenome	251	Y
F053631	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193965_10769041	F015946	N/A	MKDKFKIVDWMNNRIFPDKAFSSFEHGWEYIYSKFDNEEDHQEYFIVDINEKERGQI
Ga0193965_10769043	F053631	AGGCGG	MIRAIYFSLCFGLALLGLFVITHINLTLGLSMFALFIVKFLLMLPSTERG