NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194012_1003096

Scaffold Ga0194012_1003096


Overview

Basic Information
Taxon OID3300019739 Open in IMG/M
Scaffold IDGa0194012_1003096 Open in IMG/M
Source Dataset NameSediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? FLC_8-9_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1377
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1638Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028777Metagenome / Metatranscriptome190Y
F035554Metagenome / Metatranscriptome172N
F072865Metagenome / Metatranscriptome121N

Sequences

Protein IDFamilyRBSSequence
Ga0194012_10030962F035554AGGAGGMAAKFLEDYVGVDDLIKQMNEQYPEGRLVSEIVEKTDKMVVFKTSFYTKDNVSPKCTGHGSKYSTEDHWLEKAEQKSRGRCLRVLLGGAEPTREEMEGIVPSKAATPNKKSLDEKVKDLEAEGLVEDISMKAQAVMDNIKDFAMEITNQDLDLARNYTAQALGSMGMSKTEVSINNLQSVKNKIQDIATMARAEIDKGE
Ga0194012_10030963F028777AGGGGGMLGIFGRNKPLSTFEIISLEKNISEAKKIRYILEVEGFICSLDSEFSTSGNLRKVVHRLNNSYNLSIYKEECNCDNKQKANLNLDGTPRKHYAYKKDWAS
Ga0194012_10030964F072865N/AMKNIIVKYIGVKNYKVSDDVTLEEIHDMFQTDLSTVPVAFAKNIVPIAYAEEE
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