NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194013_1000224

Scaffold Ga0194013_1000224


Overview

Basic Information
Taxon OID3300019733 Open in IMG/M
Scaffold IDGa0194013_1000224 Open in IMG/M
Source Dataset NameSediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? FLC_9-10_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3427
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1638Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035554Metagenome / Metatranscriptome172N
F039398Metagenome / Metatranscriptome164N
F057387Metagenome / Metatranscriptome136Y
F058532Metagenome135N

Sequences

Protein IDFamilyRBSSequence
Ga0194013_10002242F039398GAGGMEYAADDINIGYMTCLMFINSEKTLVDKLNNITELQPIDHQGGVSFDLVLKSLPTYVEITMNHNGNFNIYTKTLKGETEFKDEVVETLINFLHIFYINMVDDENKLLMNAIDTTTYRKVAKRMHYREKFGDDI
Ga0194013_10002243F058532N/AMMDGIIGIVLNIVGVDMTLNQNGRRQIVKDEYDLFDNKARTSWEFICNYMNWEIVKNKEDYFEDYVCKIKGIYYPMELQVAAYWHNHSIDKLSNFYISKSKIDLLRGYVDNYINVEAGCVFMNCVPNKFATINIKYIKNSYLMQNAQGEYFYKIPITENINYFTSGLIDAKCDCLENHLEIMQRSKGRMRHLEKEYNIRGFNGICCR
Ga0194013_10002245F057387AGGAGGMPELSKELQVFWNNQIANDNDIKAAPFSGNCMFCNNAITEQDEDHSVCNSCWADLGEEE
Ga0194013_10002248F035554AGGAGGMAAKFLEDYVGVDDLIKQMNEQYPEGRLVSEIVEKTDKMVVFKTSFYTKDNVSPKCTGHGSKYSTEDHWLEKAEQKSRGRCLRVLLGSEPTAEEMEGIVPSKTTAPNKKSLDEKVKDLEAEGLVEDISMKAQAVMDNIKDFAMEITNQDLDLARNYTAQALGSMGMSKTEVSINNLQSVKNKIQDIATMARTEIDKGE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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