NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194003_1043292

Scaffold Ga0194003_1043292


Overview

Basic Information
Taxon OID3300019724 Open in IMG/M
Scaffold IDGa0194003_1043292 Open in IMG/M
Source Dataset NameSediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? FLT_9-10_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)571
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1638Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022457Metagenome / Metatranscriptome214N
F105239Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0194003_10432921F105239AGGAGMAVMQSRDTRSFVAGESLAAAQFKFVTLESDGQVDLADSAGENCIGVLLNNPAAGAAATVAVS
Ga0194003_10432922F022457N/APAPILKALEEAEVAKADAELTKRAEEALPNFNIEVAKTLIAKFDTDEAVMEALKGADAVFGESMEEFGKSDADGNFATAQDKLDALVKSYMDENKIKKSQYAVAYAAVAKTDEGKALINKSYKGE

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