Scaffold Ga0194011_1000420

Overview

Basic Information

• Taxon OID: 3300019721
• Scaffold ID: Ga0194011_1000420
• Source Dataset Name: Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? FLC_7-8_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2501
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location

• Location Name: USA: Delaware
• Coordinates
  • Lat. (^o): 38.7906
  • Long. (^o): -75.1638
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033412	Metagenome	177	N
F034560	Metagenome	174	N
F045071	Metagenome	153	N
F055697	Metagenome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194011_10004201	F045071	N/A	NPLELSSSWAGSIIKHGRNVGGWGRQAIAFLAEHGTVPTYICGNNDQSRRHNNAANRQAALQYRVTDGFELRPRNLDQMISLLLRGIPLAGGFNWWGHEVTLTDADWIDNEIAVIIRNSWRGWGDYGFGILQGSRMLADDLVAVSGGSLTGRRVQS
Ga0194011_10004202	F055697	AGGCGG	MKTVAAIFTFCTVLHFPVPDTWKFTIAKPAAASQPDWYLVAFTADNCGPCAAWKRDHLAATRKVLPVVMVDLAKAPEWKRSRQLAAPPGGRATIPGVTRIPTFWLVHRASRWPVKTWTGGRTAEQTRRLIPEDVPDWTRDTEAAPPLPK
Ga0194011_10004203	F034560	GAG	MAADNEEPQERDEDGIEFRTLNRTVRVDAKTSQKLIDWIGPHLRLIVAAVAWGVFVIATCYAASLVL
Ga0194011_10004204	F033412	GAG	MTAEIDAEFWRVLLAAWGCFGTGVMLWHWRSWANFAGLQNCSKLLLLLSPVLLSAFGYRSTEAVRTAELMARAVPVRHVGNEIEPVIADRDTITTQQGVKVEYVRTNYGAGRWGAASVRVGDQQTGRGSGSSGPSTAATSRGIAGVVSVPLW