NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194011_1000309

Scaffold Ga0194011_1000309


Overview

Basic Information
Taxon OID3300019721 Open in IMG/M
Scaffold IDGa0194011_1000309 Open in IMG/M
Source Dataset NameSediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? FLC_7-8_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2811
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1638Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012352Metagenome / Metatranscriptome281N
F058175Metagenome / Metatranscriptome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0194011_10003091F058175N/ATLTASSSATAVTMGYALEAAVDGQIMAIELIQGGNTSDQS
Ga0194011_10003095F012352AGGMAFSRGYNLLKMVEEFGEPLTLRKKTTAGTYDPTTGSVTGSATTDYSFEGYFYNYDQGIIANVDEIRRGTRKCVVPALGLAVEPDDEDQIIGSGDTVNIVSVVTIFSNGTKVCFLCDVRE

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