NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0193977_1021913

Scaffold Ga0193977_1021913


Overview

Basic Information
Taxon OID3300019719 Open in IMG/M
Scaffold IDGa0193977_1021913 Open in IMG/M
Source Dataset NameSediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? FRT_4-5_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)739
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1638Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019474Metagenome229Y
F046366Metagenome / Metatranscriptome151N

Sequences

Protein IDFamilyRBSSequence
Ga0193977_10219131F046366N/ANMNSATQTVIMHISNDQGYYNDVQEIFERCGDSYDTCMELKDMVDNIMFPSADIQAQNMDLFFRQDIIMDALSQVNWREVYEALAEVI
Ga0193977_10219133F019474GAGMNALFTTHEDKNMVIEFEVDTYKIPAFALPALGNGDYTGIMDDDEAFVDNLCEWLNEQYGEGLWHIGEVGEQYFGRADFDNLSGDVCDVELVYKMVEMEA

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.