NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194016_1021842

Scaffold Ga0194016_1021842


Overview

Basic Information
Taxon OID3300019708 Open in IMG/M
Scaffold IDGa0194016_1021842 Open in IMG/M
Source Dataset NameSediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? BRC_2-3_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)716
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1638Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004688Metagenome / Metatranscriptome428Y
F049999Metagenome146N

Sequences

Protein IDFamilyRBSSequence
Ga0194016_10218422F004688N/AMIKEYTMPCIHMNGSGETSLRRQYNELFEAVSEVHIKLLFDTDFHERDYYPLGDEAWDKAYSEREEVKKAMNTVYQYAKQHMQFLEYGKEPLPDED
Ga0194016_10218423F049999AGGAGMKIKNYLVIVEEVNRLQFEVEASSEAAAIDLVEVGEAGDPTDQRAMEFNCLSVKESTK

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