NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0194016_1018908

Scaffold Ga0194016_1018908


Overview

Basic Information
Taxon OID3300019708 Open in IMG/M
Scaffold IDGa0194016_1018908 Open in IMG/M
Source Dataset NameSediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? BRC_2-3_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)757
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1638Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004220Metagenome448Y
F062710Metagenome130N

Sequences

Protein IDFamilyRBSSequence
Ga0194016_10189081F062710AGGAGMATTVKVTFRISVPAQKEFKIVDKELWKNSKNDFVSALNDEDGKELIVSDYLEMYGLEPIDDSYSEDDPNRELECIEKVIDETGKSI
Ga0194016_10189082F004220AGGAGMVEKDKLDWCYYFKSILWRPNNSGWIRLCSKGSIEGFSISTKQTKVRDHYKKIADSGVEFYTCDDDDLDKEYGMYYGNLEFDPLDIMESYSGHTKMFHKENGEWRQL

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.