Scaffold Ga0194016_1002116

Overview

Basic Information

• Taxon OID: 3300019708
• Scaffold ID: Ga0194016_1002116
• Source Dataset Name: Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? BRC_2-3_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1861
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location

• Location Name: USA: Delaware
• Coordinates
  • Lat. (^o): 38.7906
  • Long. (^o): -75.1638
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003196	Metagenome / Metatranscriptome	501	Y
F018550	Metagenome / Metatranscriptome	234	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194016_10021161	F018550	N/A	QVLSWDAIANSLKRLYDAHAPMQSPVLCVSPKQLLDLNKELLAGNVGITGAILPRDRSIAGIDIDTIVTPFGSIGLMVIDPNIIPANTAFILDFAFIQPVFTNIPGYGTVFVRDIDQDDYARVSKAIYMEMGYDFGPPSYHLKITDVA
Ga0194016_10021162	F003196	AGG	MQLSKKVLIDISEDAVNSTGVQTDGLLLSGIVLPATMTGTAITFDFSFDGSTWVDVVETDGTEVTYTVTAGDVVRVDPSGWAFATAGFIRVSSGSTEAADRNIQLIFKQS