Scaffold Ga0194016

Basic Information
Taxon OID	3300019708 Open in IMG/M
Scaffold ID	Ga0194016_1000324 Open in IMG/M
Source Dataset Name	Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? BRC_2-3_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300019708 Open in IMG/M

Scaffold ID

Ga0194016_1000324 Open in IMG/M

Source Dataset Name

Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? BRC_2-3_MG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3618
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (92.86%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

3618

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (92.86%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location Name	USA: Delaware
Coordinates	Lat. (^o)	38.7906	Long. (^o)	-75.1638	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Delaware

Coordinates

Lat. (^o)

38.7906

Long. (^o)

-75.1638

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012529	Metagenome / Metatranscriptome	280	Y
F020815	Metagenome	222	N
F028349	Metagenome / Metatranscriptome	192	Y
F032993	Metagenome / Metatranscriptome	178	Y
F049285	Metagenome	147	N
F051059	Metagenome / Metatranscriptome	144	N
F087896	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194016_10003241	F028349	N/A	YHKNGKAVMFLGYSDIDASNAAKVVMGETGDVGYFKPRLGTDEDIYDWQYVKEITEEDLQEALGR
Ga0194016_100032410	F032993	GGAG	MKTKKIIGSLPNMEVPQLPVSLLSHMEAMGLLPVSHEDDGVDNIDVPWRSNTNYFRRDVLNERGEPLF
Ga0194016_10003242	F020815	AGGAGG	VRLYMNKQGEWVGTQAEAKKIGATMVDVPTDKPNLLKWLNTFTGAIDDAAKEVIENKPKPGGVTLKAHAWDTIRECAEKATINDMTVALAVYMDRVLDIADKQKETQQ
Ga0194016_10003243	F049285	AGGAG	MKLIKVRVNRTIEYEVSVPVEEDHRYEQVKNYLETIDWENEIFISPQNFEQIAKYYEWIDWETQQ
Ga0194016_10003244	F087896	GGAG	MNYKTKAGAIISDDGYTQVIKQHNLGYGWEATLWDNDRLVITHDATGETLSIPPESTQKLRDIFTAIKNKETDNG
Ga0194016_10003248	F012529	AGGAGG	MLEDKTYKIKVWDHHDAVIYVYARHTEQLNPEEEDVNKRRWKHWKEIVAVIPVHNGSEDYQDTSGSFQNDVKVTVDALAKLYSSSPDYEMGVEYVMNTHQYINV
Ga0194016_10003249	F051059	AGGAG	MNYGLDIYSKATKKMLAYHSSDSRKDILHLKKMYAKNNFVYIKECFGETDEDKENYRQSAKYGSTSVAS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0194016_1000324

Overview

Ecosystem & Geography

Associated Families

Sequences