NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194021_1006478

Scaffold Ga0194021_1006478


Overview

Basic Information
Taxon OID3300019703 Open in IMG/M
Scaffold IDGa0194021_1006478 Open in IMG/M
Source Dataset NameSediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? BRC_7-8_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)938
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1638Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033412Metagenome177N
F034560Metagenome174N

Sequences

Protein IDFamilyRBSSequence
Ga0194021_10064782F034560GAGMAADNEEPQDHDEDGIEWRTLNRTVRVDAKTSRKLVDWIGPHLRLIVAAVAWGVFVIATCYAASLVL
Ga0194021_10064783F033412GAGMTAEIDAEFWRVLLAAWGCFGAGVMLWHWRSWANFAGLQHCSKLLLLLSPALLSAFGYRSTEAVRTAELMAQAVPVRHVGNEIEPVIADRNTITTQQGVKVEYVRTNYGAGRWGAASVRVGDQQTGRGSG

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