Scaffold Ga0194021_1000284

Overview

Basic Information

• Taxon OID: 3300019703
• Scaffold ID: Ga0194021_1000284
• Source Dataset Name: Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? BRC_7-8_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2844
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location

• Location Name: USA: Delaware
• Coordinates
  • Lat. (^o): 38.7906
  • Long. (^o): -75.1638
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019474	Metagenome	229	Y
F046366	Metagenome / Metatranscriptome	151	N
F100944	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194021_10002842	F046366	AGGA	MNSATQTVIMHISNDQGYYNDVQEIFERCGDSYDTCMELKDMVDNIMFPSADIQAQNMDLFFRQDIIMDALSQVNWREVYEALAEVI
Ga0194021_10002844	F019474	GAGG	MVIEFEVDTYKIPAFALPALVNGDYTGIMDDDEAFVDNLCEWLNEQYGEGLWHIGEVGEQYFGRADFDNLSGDVCDVELVYKMVEMEA
Ga0194021_10002846	F100944	AGGA	MSQFRIQRTRKAPVPATQKAQTNTWRDLFASMDKGHWFLVQKRNFAKVQQAAATHMKGKYRLYKHPTRKDCHVFLVKERI