Scaffold Ga0187893_10035745

Overview

Basic Information

• Taxon OID: 3300019487
• Scaffold ID: Ga0187893_10035745
• Source Dataset Name: White microbial mat communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-4 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5468
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: USA: the Island of Hawaii
• Coordinates
  • Lat. (^o): 19.0643
  • Long. (^o): -155.8008

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026047	Metagenome / Metatranscriptome	199	Y
F038748	Metagenome / Metatranscriptome	165	Y
F066913	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187893_100357452	F066913	GGAGG	MKRRWLAGLVVAVFLFGSSGASADPSNWAQLGQIILWLQRIDATLRDINEVVDGVREKLFIVYPAGVLRHIETFFEPVDSIKAEVEKLACTWRFTPRVDRLRLALYGGGSFCRADWNVVFGPPTLTADWDLESYYDWSAVRRLNLIKTRNEKSALRADEAHWLATEALKGRNPLDPTQPYSPGYAQRLSALGAAQLGNVMVEMGDTQTAMLELDQEALNDKRRRRLLDHQTATLVYAGLTTLRDTAPDPALLLLGDRP
Ga0187893_100357455	F026047	AGG	MTRRQSECFRNLDDPLKIFSLLTVKSCGLVLLFYAGTVLSELLFGLCSLLFGDWSFLAQLGATVLLGVVLAYAERQDDEHLVPAAIRYYVSRRWRVLYSGARSDRYEGHPLEGLVQGGPWPR
Ga0187893_100357456	F038748	AGGA	MGNRRSLTLAVGLLLGALLLSSAPAFAQDPFAGLTNTLNSSARTWAAALMLIGALIAGGAIMMGSRESGHHTRNFLFGAVFLVLAGAGLAIYDRVAGLLN